Deep learning speeds up galactic calculations

A more efficient simulation.
During a supernova simulation, (left) shows the prediction by a current simulation method. (right) shows the prediction by 3D-MIM, which looks close enough to the that of the current leading method, but it takes far less time to execute, saving time, energy and costs for computing time.
Image Credit: ©2023 Hirashima et al.
(CC-BY-ND)

Supernovae, exploding stars, play a critical role in the formation and evolution of galaxies. However, key aspects of them are notoriously difficult to simulate accurately in reasonably short amounts of time. For the first time, a team of researchers, including those from The University of Tokyo, apply deep learning to the problem of supernova simulation. Their approach can speed up the simulation of supernovae, and therefore of galaxy formation and evolution as well. These simulations include the evolution of the chemistry which led to life.

When you hear about deep learning, you might think of the latest app that sprung up this week to do something clever with images or generate humanlike text. Deep learning might be responsible for some behind-the-scenes aspects of such things, but it’s also used extensively in different fields of research. Recently, a team at a tech event called a hackathon applied deep learning to weather forecasting. It proved quite effective, and this got doctoral student Keiya Hirashima from the University of Tokyo’s Department of Astronomy thinking.

A molten layer at the base of the Martian mantle ?

Artist view of Mars interior structure showing a molten layer at the base of the mantle and above the core. The purple line shows the path followed in Mars by the waves generated by the meteorite impact that occurred on September 2021 and diffracted along the CMB. The blue line represents the path followed by a seismic wave reflected at the top of the molten basal layer.
Illustration Credits: CNES/IPGP.

The analysis, by a team of scientists involved in the InSight mission, of seismic data recorded on Mars after a meteorite impact that occurred in September 2021 drastically changes our view of the internal structure and evolution of the Red Planet. Based on these results and previous geophysical data, a study published on October 26 in the journal Nature, in which researcher Attilio Rivoldini from the Royal Observatory of Belgium participated, proposes a new model for the interior of Mars, with a heterogeneous mantle containing a molten silicate layer above the liquid metal core.

The first results based on data from the InSight mission significantly improved our knowledge of the interior structure of Mars. Assuming that the mantle is compositionally homogeneous and entirely solid, the results showed that the liquid metal core has a radius of about 1830±40 km and a relatively low density (6-6.2 g/cm3) with a large concentration of light elements. The size of the metal core was determined by the detection of seismic waves reflected at a solid-liquid interface ascribed to be the Core-Mantle Boundary (CMB).

Zika Infection in Pregnant Macaques Slows Fetal Growth

Female rhesus macaque monkeys and infants at the California National Primate Research Center at UC Davis.
Photo Credit: Courtesy of University of California, Davis

Zika virus infection in pregnant rhesus macaques slows fetal growth and affects how infants and mothers interact in the first month of life, according to a new study from researchers at the California National Primate Research Center at the University of California, Davis. The work, published Oct. 25 in Science Translational Medicine, has implications for both humans exposed to Zika virus and for other viruses that can cross the placenta, including SARS-CoV2, responsible for the COVID-19 pandemic.

“Initially I thought this was a story about Zika, but as I looked at the results, I think this is also a story about how fetal infections in general affect developmental trajectories,” said Eliza Bliss-Moreau, professor of psychology at UC Davis and senior author on the paper.

In most people, Zika virus infection causes mild or no symptoms and leaves long-lasting immunity. But during pregnancy, the virus can cross the placenta and cause damage to the nervous system of the fetus. In extreme cases, it can cause microcephaly in humans.

Oregon State researchers uncover mechanism for treating dangerous liver condition

Illustration Credit: Julien Tromeur

A study spearheaded by Oregon State University has shown why certain polyunsaturated fatty acids work to combat a dangerous liver condition, opening a new avenue of drug research for a disease that currently has no FDA-approved medications.

Scientists led by Oregon State’s Natalia Shulzhenko, Andrey Morgun and Donald Jump used a technique known as multi-omic network analysis to identify the mechanism through which dietary omega 3 supplements alleviated nonalcoholic steatohepatitis, usually abbreviated to NASH.

The mechanism involves betacellulin, a protein growth factor that plays multiple positive roles in the body but also contributes to liver fibrosis, or scarring, and the progression to cirrhosis and liver cancer.

“We only succeeded in finding these surprising results because we implemented an entirely unbiased approach that incorporated a diverse type of big data analysis ranging from lipids and metabolites to whole tissue and single-cell RNA sequences,” said Morgun, a researcher in the OSU College of Pharmacy.

Simple blood test can help diagnose bipolar disorder

Providing a drop of blood for a test 
Photo Credit: Cambridge Centre for Neuropsychiatric Research

The researchers, from the University of Cambridge, used a combination of an online psychiatric assessment and a blood test to diagnose patients with bipolar disorder, many of whom had been misdiagnosed with major depressive disorder.

The researchers say the blood test on its own could diagnose up to 30% of patients with bipolar disorder, but that it is even more effective when combined with a digital mental health assessment.

Incorporating biomarker testing could help physicians differentiate between major depressive disorder and bipolar disorder, which have overlapping symptoms but require different pharmacological treatments.

Although the blood test is still a proof of concept, the researchers say it could be an effective complement to existing psychiatric diagnosis and could help researchers understand the biological origins of mental health conditions. The results are reported in the journal JAMA Psychiatry.

Bipolar disorder affects approximately one percent of the population – as many as 80 million people worldwide – but for nearly 40% of patients, it is misdiagnosed as a major depressive disorder.

A Comprehensive Picture of Health Benefits of Eggs

Farm fresh eggs
Photo Credit: Couleur

Are eggs good for you?

Scientists have been studying this divisive question for years. Some have found that egg intake increases LDL, or “bad” cholesterol, and inflammatory markers associated with heart disease and diabetes, while others have highlighted the benefits of egg consumption thanks to their nutritional density.

Catherine J. Andersen, associate professor of nutritional sciences in the College of Agriculture, Health and Natural Resources, recently published a study in Nutrients that provides a broader perspective on the nutritional outcomes of egg consumption in healthy young adults.

Most existing research articles that evaluate the health effects of eggs tend to focus on a more limited range of standard clinical measurements, looking at biomarkers for heart disease, diabetes, body composition, inflammation, immune health, and anemia in isolation, rather than all together. Participants in these studies also tend to have pre-existing risk factors for chronic disease. They typically also follow additional dietary regimen changes like weight loss plans. These factors can complicate interpretations of how eggs affect health markers in the general or young, healthy population.

Defect in fruit fly respiratory system may provide insights into human aortic aneurysms

Photo Credit: Erik Karits

A team of researchers led by Leipzig University has gained new insights into the respiratory system of fruit flies – the so-called tracheal system – which could be important for future research into aneurysms. Dr Matthias Behr from the Institute of Biology (Department of Cell Biology) at Leipzig University and his team, together with colleagues from the Max Planck Institute for Multidisciplinary Sciences in Göttingen, carried out genetic, cell biological and biochemical studies on Drosophila embryos. They found that the cells in the fruit fly’s tracheal system are connected to the extracellular matrix by the proteins Dumpy and Piopio. They have just published their research findings in the journal eLife.

Similar to the human circulatory system or lungs, the fruit fly’s tracheal system consists of a network of tubes. During the embryonic development of these insects, this network of tubes is filled with a special substance that gives them shape (an extracellular matrix), which is secreted by the surrounding cells. As the organs grow, the cells are closely connected to this extracellular matrix and “shimmy” along it to form the right shape and size of tubes.

Research reveals three new marsupial species – though all likely extinct

A Crest-Tail Mulgara.
Photo Credit: Bobby Tamayo, Simpson Desert, QLD

The exciting discovery of three new species of a small Australian marsupial has been tempered by the sad fact that each of the newly identified species of mulgara is likely already extinct.

The Curtin University-led study has identified three new species of mulgaras, which are small carnivorous marsupials related to the Tasmanian Devil and quoll and that are important to the arid and semi-arid regions they inhabit in South Australia, Western Australia, the Northern Territory and Queensland.

Led by Curtin PhD student Jake Newman-Martin, a collaboration with Dr Kenny Travouillon from the Western Australian Museum, Associate Professor Natalie Warburton from Murdoch University and Associate Professor Milo Barham and Dr Alison Blyth both from Curtin analyzed preserved specimens of mulgaras from museums across the country, including bones found in caves which had previously not been identifiable.

Mr. Newman-Martin said the research had identified six species of mulgaras, as opposed to the previously accepted two and it also concluded that a third previously named mulgara was indeed a valid species. However, four of the proposed species appeared to be already extinct.

Scientists uncover cause of mysterious deaths of elephants in Zimbabwe

Photo Credit: Charl Durand

During this unique study, scientists from the Victoria Falls Wildlife Trust, the Animal and Plant Health Agency UK, the University of Surrey and laboratories in South Africa investigated the mysterious deaths of 35 elephants mostly between August and September 2020, in a 40 x 25 km radius of North-Western Zimbabwe. This incident followed the death of approximately 350 elephants in neighboring northern Botswana from May to June 2020, which triggered much international concern. 

African savanna elephants are an endangered species with only 350,000 remaining in the wild and ongoing losses estimated at eight percent annually. This finding is very worrying since elephants are on the International Union for Conservation of Nature red list already. Investigating the deaths of these elephants is crucial to sustaining the future of this majestic species. 

Post-COVID condition is not linked to ongoing infection or active brain damage

Post COVID-19 condition does not appear to be linked to direct viral invasion of the brain or active brain damage. This has been shown by a study at the University of Gothenburg. Searching for abnormal biomarkers among the participants yielded no hits in either blood or cerebrospinal fluid samples.

The condition that can follow the acute phase of COVID-19 infection, termed “Post-COVID condition,” or “long-covid” can persist for several months subsequent to the initial infection. The condition includes various combinations of fatigue, apathy, and difficulties with memory and concentration.

The current study, published in The Journal of Infectious Diseases, included 25 people with confirmed post-COVID condition, six people without residual symptoms after COVID-19, and 17 control subjects who were completely free of COVID-19.

The strength of the study lies not in the number of participants, which is fairly limited, but in the fact that they all – including the control subjects – underwent not only blood tests but also the considerably more invasive procedure of lumbar punctures to collect cerebrospinal fluid.

At the time when the samples were taken, at least three months had passed since the first symptoms of COVID-19 in those who had had the disease. The samples were taken between February and November 2021, and were analyzed for a total of 37 different biomarkers.