The Unraveling of a Protist Genome Could Unlock the Mystery of Marine Viruses

Light-microscopy image of clusters of Aurantiochytrium limacinum cells. The marine protist is prevalent in the world’s oceans.
Image Credits: Laura Halligan, Joshua Rest and Jackie Collier

Viruses are the most prevalent biological entities in the world’s oceans and play essential roles in its ecological and biogeochemical balance. Yet, they are the least understood elements of marine life. By unraveling the entire genome of a certain marine protist that may act as a host for many viruses, an international research team led by scientists from Stony Brook University sets the stage for future investigations of marine protist genomes, marine microbial dynamics and the evolutionary interplay between host organisms and their viruses — work that may open doors to a better understanding of the “invisible” world of marine viruses and offers a key to the ecology and health of oceans worldwide. The research is published early online in Current Biology.

Food webs of the oceans provide humanity with essential food sources as well as the wonderment of sea creatures from polar bears to penguins. This wellspring of life is supported mainly by microscopic organisms, including the wide presence of viruses. Learning more about the viruses through DNA research and other forms of investigation is essential to scientists’ understanding of the sea. Novel groups of viruses are still being discovered, such as the recently discovered “mirusvirues” featured in a Nature paper earlier this year.

Study reveals location of starfish’s head

Postdoctoral scholar Laurent Formery (left) and biology Professor Christopher Lowe with starfish on the shore of Stanford’s Hopkins Marine Station, in Monterey, California.
Photo Credit: LiPo Ching / Stanford University

A new study that combines genetic and molecular techniques helps solve the riddle of starfish body plans, and how starfish start life with bilateral body symmetry – just like humans – but grow up to be adults with fivefold “pentaradial” symmetry.

If you put a hat on a starfish, where would you put it? On the center of the starfish? Or on the point of an arm and, if so, which one? The question is silly, but it gets at serious questions in the fields of zoology and developmental biology that have perplexed veteran scientists and schoolchildren in introductory biology classes alike: Where is the head on a starfish? And how does their body layout relate to ours?

Now, a new Stanford study that used genetic and molecular tools to map out the body regions of starfish – by creating a 3D atlas of their gene expression – helps answer this longstanding mystery. The “head” of a starfish, the researchers found, is not in any one place. Instead, the headlike regions are distributed with some in the center of the sea star as well as in the center of each limb of its body.

The Remains of an Ancient Planet Lie Deep Within Earth

Video Credit: California Institute of Technology

In the 1980s, geophysicists made a startling discovery: two continent-sized blobs of unusual material were found deep near the center of the Earth, one beneath the African continent and one beneath the Pacific Ocean. Each blob is twice the size of the Moon and likely composed of different proportions of elements than the mantle surrounding it.

Where did these strange blobs—formally known as large low-velocity provinces (LLVPs)—come from? A new study led by Caltech researchers suggests that they are remnants of an ancient planet that violently collided with Earth billions of years ago in the same giant impact that created our Moon.

The study, published in the journal Nature on November 1, also proposes an answer to another planetary science mystery. Researchers have long hypothesized that the Moon was created in the aftermath of a giant impact between Earth and a smaller planet dubbed Theia, but no trace of Theia has ever been found in the asteroid belt or in meteorites. This new study suggests that most of Theia was absorbed into the young Earth, forming the LLVPs, while residual debris from the impact coalesced into the Moon.

What Happens When We Pass Out? Researchers ID New Brain and Heart Connections

An image of a heart labeled by vagal sensory neurons. In a new study published in the journal Nature, UC San Diego researchers and their colleagues found that these neurons trigger fainting, laying a foundation for addressing fainting-related disorders.
Image Credit: Augustine Lab, UC San Diego

Nearly 40 percent of people experience syncope, or fainting spells, at least once in their lives. These brief losses of consciousness, whether brought by pain, fear, heat, hyperventilation or other causes, account for a significant portion of hospital emergency room visits. Yet the exact root mechanisms at play when people “pass out” largely have remained a mystery.

Publishing a new report in Nature, University of California San Diego researchers, along with colleagues at The Scripps Research Institute and other institutions, have for the first time identified the genetic pathway between the heart and brain tied to fainting.

One of their unique approaches was to think of the heart as a sensory organ rather than the longstanding viewpoint that the brain sends out signals and the heart simply follows directions. School of Biological Sciences Assistant Professor Vineet Augustine, the paper’s senior author, applies a variety of approaches to better understand these neural connections between the heart and brain.

Researchers demonstrate novel technique to observe molten salt intrusion in nuclear-grade graphite

From left, Yuxuan Zhang, James Keiser, Jisue Moon, Cristian Contescu, Erik Stringfellow (back) and Nidia Gallego, with Dino Sulejmanovic (not shown), first visualized molten salt distribution in graphite pores.
Photo Credit: Carlos Jones/ORNL, U.S. Dept. of Energy

In response to a renewed international interest in molten salt reactors, researchers from the Department of Energy’s Oak Ridge National Laboratory have developed a novel technique to visualize molten salt intrusion in graphite.

During ORNL’s revolutionary Molten Salt Reactor Experiment, or MSRE, in the 1960s, scientists first demonstrated the feasibility of nuclear fission reactions with molten fluoride salt used both as a fuel carrier and as a coolant, substituting for the solid fuel and water used in traditional nuclear reactors. Molten salt reactor designs show great promise as a means of carbon-free power generation.

To slow down neutrons so they can easily promote nuclear fission, nuclear reactors use a material called a moderator. To moderate the MSRE, scientists used synthetic graphite, which is resistant to thermal shock and dimensionally stable because of its extensive pore system resulting from the manufacturing process. MSRE graphite was custom-made and specially coated to decrease porosity and defend against detrimental effects that may occur when hydraulic and gas pressures cause molten salt to seep into graphite’s pores. Moreover, preventing molten salt intrusion avoids additional issues with waste management during reactor decommissioning.

Higher risk of cancer following 'all clear' after suspected cancer referral

Photo Credit: National Cancer Institute

Patients who were referred to urgent suspected cancer pathways, but were found not to have cancer at that time, have a higher risk of subsequent cancer in the 1-5 years following the ‘all clear’ than those who haven’t been through the referral pathways.

The study, published today in Lancet Oncology, is the first to examine the risk of cancer in patients in England who entered the urgent suspected cancer pathway but were found not to have cancer at that time. These patients were found to have a higher-than-expected risk of subsequent cancer in the 1-5 years after the initial ‘all clear’.

In England, the urgent suspected cancer referral pathway is the most common route to diagnosis. Of the 3 million patients who are referred for urgent cancer assessments in England each year, 7% are found to have cancer. This leaves a large group of patients who go through these pathways but do not have cancer at the time – a group that is currently understudied and who may be in need of support.

New study: Deep-sea pressure preserves food for microbes in the abyss

A flake of marine snow from the experiment.
Photo Credit: © Peter Stief/SDU

A new study from the Danish Center for Hadal Research reports on a series of experiments with exposing marine snow to increasing pressure - up to 1000 bar, which corresponds to the pressure at the bottom of some of the world's deep-sea trenches, 10 km below the sea surface.

Marine snow is millimeter-sized flakes, created when sticky, dead cells at the sea surface clump together with other dead or dying cells, particles and bacteria and sink to the bottom. The organic material can be dead algae, dead small animals, or their feces. Together, it is called marine snow because the flakes look like snow as they sink through the water column. There can be hundreds of different bacteria in one flake in addition to particles of organic matter.

"Not much is known about how marine snow responds to the increasing pressure when it sinks. But it is known that marine snow is food for an enormous number of microbes and small animals on the seabed. In fact, there are more microbes in the part of the ocean that lies at or below 1000 meters depth than anywhere else on Earth. This habitat is extremely large, and there can be a long distance between the microbes down there, but nevertheless a huge number of Earth's organisms thrive under high pressure, and we don't know how", says biologist Peter Stief, who is the lead author of the study.

Risk of serious infection even in low-active IBD

Karl Mårild, Institute of Clinical Sciences, Sahlgrenska Academy at the University of Gothenburg.
 Photo Credit: Västra Götalandsregionen

Inflammatory bowel disease (IBD) is an independent risk factor for serious infection, even at very low levels of gastrointestinal inflammation. This has been shown by a study at the University of Gothenburg.

IBD is an umbrella term for chronic inflammatory bowel diseases, with a population prevalence of around 0.5%. The main types of IBD are ulcerative colitis and Crohn’s disease. Unlike irritable bowel syndrome (IBS), IBD results in visible damage to the intestinal mucous membrane.

IBD is characterized by intermittent symptoms. Periods of high disease activity are sometimes followed by longer periods of low or no activity. However, the extent to which IBD patients with low disease activity are also at increased risk of serious infections, including sepsis, has been unclear.

The current study, published in the journal Clinical Gastroenterology and Hepatology, included data on 55,626 individuals diagnosed with IBD. ‘Serious infections’ referred to infections requiring hospitalization.

Meteors Can Be Affected by Massive Objects Within and Near the Solar System

Superimposed images of FH1 flight recorded in Finland.
Photo Credit: Maria Gritsevich

Apparently interstellar meteors may be the result of accelerated meteoroid collisions with massive objects passing near or through the Solar System. This was reported by Maria Gritsevich, Associate Professor at the University of Helsinki and Senior Researcher at the Ural Federal University, at the VII Workshop on Robotic Autonomous Observatories in Malaga, Spain.

The conclusion, announced by Maria Gritsevich at the workshop as co-author of a paper and scientific article published in the journal Icarus, is due to the study of meteor FH1. This is an astronomical event registered by the Finnish Fireball Network on October 23, 2022. The speed of FH1 exceeded the speed of objects within the solar system. Thus, FH1 could be both an object in the Oort Cloud, a theoretical spherical region - the source of long-period comets - at the edge of the Solar System, and an interstellar object.

"According to our hypothesis, the trajectory of the FH1 meteoroid could have been affected by the passage of the so-called Scholz star - a double star system - close to the Sun. This event is estimated to have occurred several tens of thousands of years ago, and the gravitational perturbations caused by it changed the orbit of the meteoroid", explains Maria Gritsevich.

High metabolism is an early sign of Alzheimer’s disease

Illustration Credit: geralt

An early phase in the process of developing Alzheimer’s disease is a metabolic increase in a part of the brain called the hippocampus, report researchers from Karolinska Institutet in a study published in Molecular Psychiatry. The discovery opens up new potential methods of early intervention.

Alzheimer’s disease is the most common form of dementia and strikes about 20,000 people in Sweden every year. Researchers now show that a metabolic increase in the mitochondria, the cellular power plants, is an early indicator of the disease. 

The teams behind the study used mice that developed Alzheimer’s disease pathology in a similar way to humans. The increase in metabolism in young mice was followed by synaptic changes caused by disruption to the cellular recycling system (a process known as autophagy), a finding that was awarded the Nobel Prize in Physiology or Medicine in 2016. 

After a time, metabolism in the Alzheimer brain usually declines, which contributes to the degradation of synapses. This the researchers could also see in the older mice, which had had the disease for a longer time. 

Fossil fuels responsible for heart arrhythmias in mammals

Photo Credit: Pixabay

One of the most common byproducts of the burning of fossil fuels, phenanthrene, causes heart arrhythmias in mice, proving for the first time it is toxic to mammals, new research has discovered.

The study, led by The University of Manchester in collaboration with the University of Bristol and Moscow State University, and funded by the British Heart Foundation, is published today in the journal Environmental Health Perspectives.

Thanks to earlier work by one of the lead authors Professor Holly Shiels from Manchester in conjunction with scientists at the University of Bristol, Moscow State University, National Oceanic and Atmospheric Association (NOAA) and Stanford University, phenanthrene's toxicity to the hearts of fish and crustaceans (crayfish) has been well established.

But now the team has discovered the change also occurs in healthy mouse hearts when directly exposed to phenanthrene, mimicking what happens when we breathe in pollution.

Professor Holly Shiels said: "We've known that phenanthrene is causally linked to cardiotoxicity in fish for many years - scientists recognized this following the disastrous impact of the Exxon Valdez oil disaster in Alaska in 1989.

Ocean warming is accelerating, and hotspots reveal which areas are absorbing the most heat

The Southern Ocean (Antarctic Ocean) saw the largest increase in heat storage over the past two decades.

A new study reveals increasing warming rates in the world’s oceans in recent decades and the locations with the greatest heat uptake.

Ocean warming has accelerated dramatically since the 1990s, nearly doubling during 2010–2020 relative to 1990–2000, according to new UNSW Sydney-led research.

The study, published this week in Nature Communications, also shows some areas of the ocean are doing more of the work in heat uptake or absorption, which has implications for our understanding of sea-level rise and climate impacts.

Increasing concentrations of greenhouse gases in the atmosphere from human activity traps heat within the climate system, warming air, the land surface, the oceans, and melting polar ice. Oceans do by far the most work, absorbing more than 90 per cent of the excess human-generated heat accumulated in the Earth’s climate system, moderating atmospheric temperature rises.

Mobile phone use may affect semen quality

Sample of human spermatozoa used in the study by Serge Nef and Rita Rahban (2023), researcher at the Department of Genetic Medicine and Development of the UNIGE Faculty of Medicine and at the SCAHT - Swiss Centre for Applied Human Toxicology.
Image Credit: Rita Rahban

Does electromagnetic radiation emitted by mobile phones affect semen quality? While various environmental and lifestyle factors have been proposed to explain the decline in semen quality observed over the last fifty years, the role of mobile phones has yet to be demonstrated. A team from the University of Geneva (UNIGE), in collaboration with the Swiss Tropical and Public Health Institute (Swiss TPH), has published a major cross-sectional study on the subject. It shows that frequent use of mobile phones is associated with a lower sperm concentration and total sperm count. However, researchers did not find any association between mobile phone use and low sperm motility and morphology. Read the results in Fertility and Sterility.

Semen quality is determined by the assessment of parameters such as sperm concentration, total sperm count, sperm motility and sperm morphology. According to the values established by the World Health Organization (WHO), a man will most probably take more than one year to conceive a child if his sperm concentration is below 15 million per milliliter. In addition, the percentage chance of pregnancy will decrease if the sperm concentration is below 40 million per milliliter.

Many studies have shown that semen quality has decreased over the last fifty years. The sperm count is reported to have dropped from an average of 99 million sperm per milliliter to 47 million per milliliter. This phenomenon is thought to be the result of a combination of environmental factors (endocrine disruptor, pesticides, radiation) and lifestyle habits (diet, alcohol, stress, smoking).

Amazon deforestation linked to long distance climate warming

Amazon Forest seen from the Amazon Tall Tower Observatory, a scientific research facility in the Amazon rainforest of Brazil. 
Photo Credit Dr Jess Baker, University of Leeds.

Deforestation in the Amazon causes land surfaces up to 100 kilometers away to get warmer, according to a new study.

The research, by a team of British and Brazilian scientists, led by Dr Edward Butt at the University of Leeds, suggests that tropical forests play a critical role in cooling the land surface - and that effect can play out over considerable distances. 

It is known that when tropical forests are cleared, the climate in the immediate vicinity gets warmer.  

In this latest study, the researchers wanted to know if deforestation in the Amazon was resulting in climate warming further afield, and the study examined the impact of forest loss on sites up to 100 kilometers away. 

Researchers Show SARS-Cov-2 Infection Affects Energy Stores in the Body, Causing Organ Failure

Jonathan C. Schisler, PhD
Photo Credit: Courtesy of UNC

An international research team, including Jonathan C. Schisler, PhD, in the UNC School of Medicine, has found how SARS-CoV-2 causes widespread “energy outages” throughout major organs, and how these effects contribute to debilitating long COVID symptoms.

The lungs were once at the forefront of SARS-Cov-2 research, but as reports of organ failure and other serious complications poured in, scientists set out to discover how and why the respiratory virus was causing serious damage to the body’s major organs, including the lungs.

An interdisciplinary COVID-19 International Research Team (COV-IRT), which includes UNC School of Medicine’s Jonathan C. Schisler, PhD, found that SARS-CoV-2 alters mitochondria on a genetic level, leading to widespread “energy outages” throughout the body and its major organs. Their findings, published in Science Translational Medicine, explain how these effects contribute to long COVID symptoms and point to new therapeutic targets.

“We found that at peak infection time, there are distinct changes in different regions of the brain, including is a large decrease in mitochondrial genes in the cerebellum, the part of the brain that controls our muscles, balance, cognition, and emotion” said Schisler, assistant professor of pharmacology and member of the UNC McAllister Heart Institute. “The lung is the primary site of infection, but molecular signals are being transmitted affecting the entire body, with the heart, kidney, and liver being more affected than others, even long after the virus is gone.”