. Scientific Frontline

Monday, January 30, 2023

Marburg vaccine shows promising results in first-in-human study

Colorized scanning electron micrograph of Marburg virus particles (blue) both budding and attached to the surface of infected VERO E6 cells (orange).
Image Credit: National Institute of Allergy and Infectious Diseases

A newly published paper in The Lancet shows that an experimental vaccine against Marburg virus (MARV) was safe and induced an immune response in a small, first-in-human clinical trial. The vaccine, developed by researchers at the National Institute of Allergy and Infectious Diseases (NIAID), part of the National Institutes of Health, could someday be an important tool to respond to Marburg virus outbreaks.

This first-in-human, Phase 1 study tested an experimental MARV vaccine candidate, known as cAd3-Marburg, which was developed at NIAID’s Vaccine Research Center (VRC). This vaccine uses a modified chimpanzee adenovirus called cAd3, which can no longer replicate or infect cells, and displays a glycoprotein found on the surface of MARV to induce immune responses against the virus. The cAd3 vaccine platform demonstrated a good safety profile in prior clinical trials when used in investigational Ebola virus and Sudan virus vaccines developed by the VRC.

Mating causes ‘jet lag’ in female fruit flies, changing behavior

A seminal fluid protein transferred from male to female fruit flies during mating changes the expression of genes related to the fly’s circadian clock, Cornell research has found.
Photo Credit: Erik Karits

A seminal fluid protein transferred from male to female fruit flies during mating changes the expression of genes related to the fly’s circadian clock, an innovative technique has revealed.

The finding, published in the Proceedings of the National Academy of Sciences, could help explain how this protein, called sex peptide, alters the female’s behavior.

Post-mating, sex peptide has been shown to elicit increased egg-laying, aggression, activity and feeding, while reducing sleep and interest in mating in previously unmated females.

“Flies like to eat at certain times of day,” said Mariana Wolfner ’74, professor of molecular biology and genetics and a Stephen H. Weiss Presidential Fellow in the College of Arts and Sciences, and one of the paper’s senior authors. “They sleep at certain times, and the circadian clock machinery controls when flies are likely to do these things.

Climate Change May Cut U.S. Forest Inventory by a Fifth This Century

Mountain forests.
Photo Credit  Alek Kalinowsk

A study led by a North Carolina State University researcher found that under more severe climate warming scenarios, the inventory of trees used for timber in the continental United States could decline by as much as 23% by 2100. The largest inventory losses would occur in two of the leading timber regions in the U.S., which are both in the South.

Researchers say their findings show modest impacts on forest product prices through the end of the century, but suggest bigger impacts in terms of storing carbon in U.S. forests. Two-thirds of U.S. forests are classified as timberlands.

“We already see some inventory decline at baseline in our analysis, but relative to that, you could lose, additionally, as much as 23% of the U.S. forest inventory,” said the study’s lead author Justin Baker, associate professor of forestry and environmental resources at North Carolina State University. “That’s a pretty dramatic change in standing forests.”

Boeing Awarded U.S. Air Force Contract for 15 KC-46A Tankers

KC-46A Pegasus tanker
Photo Credit: Boeing

The U.S. Air Force has awarded Boeing a $2.3 billion contract for the ninth production lot of 15 KC-46A Pegasus tanker aircraft, expanding its fleet of the world’s most advanced multi-mission aerial refueler. To date, 128 KC-46A Pegasus are on contract with the U.S. Air Force, with 68 delivered and operationally deployed worldwide.

“The combat-ready KC-46A is transforming the role of the tanker for the 21st century,” said James Burgess, vice president and KC-46 program manager. “We’re proud to work side-by-side with the Air Force ensuring the Pegasus provides unmatched capabilities and continues to evolve for the U.S. and its allies’ global mission needs.”

The KC-46A Pegasus delivers crucial fuel and data for the fleet, as well as cargo, personnel and aeromedical transportation for joint force rapid mobility, global reach and agile combat employment.

Researchers can ‘see’ crystals perform their dance moves

Wenbin Li (left) and Aditya Mohite.
Photo Credit: Jeff Fitlow/Rice University

Rice University researchers already knew the atoms in perovskites react favorably to light. Now they can see precisely how those atoms move.

A breakthrough in visualization supports their efforts to squeeze every possible drop of utility out of perovskite-based materials, including solar cells, a long-standing project that only recently yielded an advance to make the devices far more durable.

A study published in Nature Physics details the first direct measurement of structural dynamics under light-induced excitation in 2D perovskites. Perovskites are layered materials that have well-ordered crystal lattices. They are highly efficient harvesters of light that are being explored for use as solar cells, photodetectors, photocatalysts, light-emitting diodes, quantum emitters and more.

“The next frontier in light-to-energy conversion devices is harvesting hot carriers,” said Rice University’s Aditya Mohite, a corresponding author of the study. “Studies have shown that hot carriers in perovskite can live up to 10-100 times longer than in classical semiconductors. However, the mechanisms and design principles for the energy transfer and how they interact with the lattice are not understood.”

RUDN University Chemists Create Substances for Supramolecules Self-assembly

Illustration Credit: RUDN University

RUDN University chemists derived molecules that can assemble into complex structures using chlorine and bromine halogen atoms. They bind to each other as “Velcro” — chlorine “sticks” to bromine, and vice versa. As a result, supramolecules are assembled from individual molecules. The obtained substances will help to create supramolecules with catalytic, luminescent, conducting properties.

Supramolecules are the structures made of several molecules. Individual molecules are combined, for example, by self-assembly or without external control. The resulting structure has properties that the molecules did not have individually. That is the way to create new materials, catalysts, molecular machines for drug delivery, conductors, and so on. To get a material with the specified properties, you need to choose the right starting molecules and auxiliary substances that will ensure their unification. One of the ways to control self-assembly is halogen-halogen interactions. These are the chemical bonds forming between two halogens (for example, chlorine, fluorine, bromine). RUDN University chemists have created a molecule with a halogen bond that can form supramolecules by itself or provide the required self-assembly with other substances. They will help to create substances for the chemical industry, medicine, and electronics.

Researchers revisit potent drug as promising treatment for acute leukemia

Photo Credit: Louis Reed

The two-pronged attack of a “forgotten drug” simultaneously targets two cancer-causing pathways of leukemia to stop the disease in its tracks

A team of researchers from the Cancer Science Institute of Singapore (CSI Singapore) at the National University of Singapore, led by Associate Professor Takaomi Sanda and Dr Lim Fang Qi, has breathed new life into an existing drug — combatting a type of blood cancer called T-cell acute lymphoblastic leukemia, or T-ALL.

The drug, called PIK-75, was initially discovered over a decade ago but was dismissed in favor of newer ones. Now, it has made a comeback that deems it unmissable — the researchers established that the drug could block not just one but two crucial cancer-causing pathways of T-ALL, enabling them to develop new treatments that could effectively stem the disease.

The increase of fungal infection

A strain of Candida auris cultured in a petri dish at a CDC laboratory.
Photo Credit: Shawn Lockhart / Centers for Disease Control / Public Domain

Late last year the WHO published a report highlighting the first-ever list of fungal "priority pathogens" – a catalogue of the 19 fungi that represent the greatest threat to public health. The premise behind the publication is both because fungi are a significant and increasing threat to public health and because there is little global R&D into fungi or their treatment.

According to Professor Ana Traven, from the Biomedicine Discovery Institute, fungi can range from the benign (skin and nail infections and vaginal thrush) to the deadly (Candida, Aspergillus), “and they have been largely ignored because deadly fungal infections predominantly target people who are immunosuppressed, they are generally not transmitted in human-to-human contact.”

Saturday, January 28, 2023

Discovering Unique Microbes Made Easy with DOE Systems Biology Knowledgebase (KBase)

Overview of Metagenome-Assembled Genome Extraction data and analysis workflow using KBase apps.
Image courtesy of Chivian, D. et al. Metagenome-assembled genome extraction and analysis from microbiomes using KBase. Nature Protocols 18 (2022).

Microbes are foundational for life on Earth. These tiny organisms play a major role in everything from transforming sunlight into the fundamental molecules of life. They help to produce much of the oxygen in our atmosphere. They even cycle nutrients between air and soil. Scientists are constantly finding interactions between microbes and plants, animals, and other macroscopic lifeforms. As genomic sequencing has advanced, researchers can investigate not only isolated microbes, but also whole communities of microorganisms – known as microbiomes – based on DNA found in an environment. The genomes extracted from these communities (metagenomic sequences) can identify the organisms that carry out biogeochemical processes, contribute to health or disease in human gastrointestinal microbiomes, or interact with plant roots in the rhizosphere. The Department of Energy Systems Biology Knowledgebase (KBase) recently released a suite of features and a protocol for performing sophisticated microbiome analysis that can accelerate research in microbial ecology.

Ancestral variation guides future environmental adaptations

A sea campion in its natural habitat on the coast.
Photo Credit: Bangor University

The humble sea campion flower can show us how species adapt.

The speed of environmental change is very challenging for wild organisms. When exposed to a new environment individual plants and animals can potentially adjust their biology to better cope with new pressures they are exposed to - this is known as phenotypic plasticity.

Plasticity is likely to be important in the early stages of colonizing new places or when exposed to toxic substances in the environment. New research published in Nature Ecology & Evolution, shows that early plasticity can influence the ability to subsequently evolve genetic adaptations to conquer new habitats.

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Discovery of unexpected collagen structure could ‘reshape biomedical research’

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