. Scientific Frontline

Sunday, November 12, 2023

A closer look at rebel T cells

Video Credit: La Jolla Institute

Scientists at La Jolla Institute for Immunology (LJI) are investigating a talented type of T cell.

Most T cells only work in the person who made them. Your T cells fight threats by responding to molecular fragments that belong to a pathogen—but only when these molecules are bound with markers that come from your own tissues. Your influenza-fighting T cells can’t help your neighbor, and vice versa.

“However, we all have T cells that do not obey these rules,” says LJI Professor and President Emeritus Mitchell Kronenberg, Ph.D. “One of these cell types is mucosal-associated invariant T (MAIT) cells.”

Now Kronenberg and his LJI colleagues have uncovered another MAIT cell superpower: MAIT cells can recognize the same markers whether they come from humans or mice. Kronenberg calls this finding “astounding.” “Humans diverged from mice in evolution 60 million years ago,” he says.

This new research, published in Science Immunology, sheds light on the genes and nutrients that give MAIT cells their fighting power. The findings are an important step toward one day harnessing these cells to treat infectious diseases and improve cancer immunotherapies.

Researchers identify previously unknown step in cholesterol absorption in the gut

Illustration Credit: Scientific Frontline

UCLA researchers have described a previously unknown step in the complex process by which dietary cholesterol is processed in the intestines before being released into the bloodstream – potentially revealing a new pathway to target in cholesterol treatment.

Although an existing drug and statins impact part of the process, an experimental drug being studied in UCLA research labs appears to specifically target the newfound pathway, possibly adding a new approach to the cholesterol management toolbox.

“Our results show that certain proteins in the Aster family play a critical role in moving cholesterol through the absorption and uptake process,” said Dr. Peter Tontonoz, a UCLA professor and researcher in Pathology and Laboratory Medicine and Biological Chemistry, senior author of an article in Science. “The Aster pathway appears to be a potentially attractive target for limiting intestinal cholesterol absorption and reducing levels of plasma cholesterol.”

Cholesterol from food is absorbed by cells that line the inner surface of the intestines – enterocytes – where it is processed into droplets that eventually reach the bloodstream. But this journey involves a multistep process.

Thursday, November 9, 2023

Plastics treaty must tackle problem at source

The treaty should cover the entire lifecycle of plastics, including fossil fuel production.
Photo Credit Aaron M Sprecher / Greenpeace

The new Global Plastics Treaty must tackle the problem at source, researchers say.

An international negotiation meeting (INC-3) in Kenya begins on Monday, aiming to further develop a legally binding treaty on plastic pollution.

Writing in the journal Science, researchers say the treaty must priorities “upstream” issues: cutting total production and consumption of plastics, phasing out hazardous chemicals and tackling fossil fuel subsidies.

They highlight a “worrying” level of focus on downstream recycling and waste management – when the true solution must address the full life cycle of plastics.

They say the treaty must be holistic – with more focus on early interventions and the people, places and ecosystems most impacted by plastic pollution.

“Right now, simply too much attention and capital is focused ‘downstream’ – recycling and cleaning up plastic already in the environment, in many cases just after a single use” said Dr Mengjiao (Melissa) Wang, from Greenpeace Research Laboratories at the University of Exeter.

Antibodies to Cow’s Milk Linked to Increased Risk of Cardiovascular Death

Corinne Keet, MD, PhD, pediatric allergy and immunology professor in the UNC Department of Pediatrics
Photo Credit: Courtesy of University of North Carolina School of Medicine

Sensitivity to common food allergens such as cow’s milk and peanuts could be an important and previously unappreciated cause of heart disease, new research suggests – and the increased risk for cardiovascular death includes people without obvious food allergies.

In a paper published in The Journal of Allergy and Clinical Immunology that describes analyses led by Corinne Keet, MD, PhD, pediatric allergy and immunology professor in the UNC Department of Pediatrics of two longitudinal studies, the authors show that the people who produced IgE antibodies to cow’s milk and other foods were at significantly increased risk of cardiovascular mortality. This was true even when traditional risk factors for heart disease, such as smoking, high blood pressure, and diabetes were accounted for. The strongest link was for cow’s milk, but IgE to other allergens such as peanut and shrimp were also significant among those who eat the foods.

This troubling finding represents the first time that IgE antibodies to common foods have been linked to increased risk of cardiovascular mortality, the researchers report. The findings do not conclusively prove that food antibodies are causing the increased risk, but the work builds on previous studies connecting allergic inflammation and heart disease.

What’s the story behind ASMR clips?

Quiet noises such as touching a microphone with your fingertips trigger a pleasant feeling in some people.
Photo Credit: © RUB, Marquard

Researchers at Ruhr University Bochum have published the first systematic review of Autonomous Sensory Meridian Response (ASMR).

Millions of people watch content creators on YouTube and social media platforms such as TikTok as they whisper soothing words, perform simulated role plays such as a visit to the hairdresser, or interact with certain objects such as the keyboard of a computer in a specific rhythm. About 25 to 30 percent of the viewers experience the Autonomous Sensory Meridian Response (ASMR) associated with well-being, a characteristic tingling sensation on the scalp and neck. Tobias Lohaus of Ruhr University Bochum, Germany, together with Professor Patrizia Thoma (also Ruhr University) and Professor Silja Bellingrath (University of Duisburg-Essen), published the first systematic review on this topic. This systematic review reveals that, among other things, this phenomenon is associated with short-term positive effects on mental health. The research team published their findings in the journal Psychology of Consciousness: Theory, Research, and Practice.

General aviation sector grounded by red tape and sky-high costs

Dr Lucas Tisdall piloting his plane.
Photo Credit: Courtesy of University of South Australia

Red tape, over-regulation, spiraling costs and a vacuum of government policy are putting significant pressure on the general aviation sector in Australia, according to a survey of industry chiefs.

Ageing infrastructure, thin profit margins and conflicts over airspace allocation are all contributing to pessimism in the non-airline civil aviation sector that employs thousands of people.

In a new paper published this month in Case Studies on Transport Policy, aviation experts from Queensland and the University of South Australia (UniSA) outline the issues plaguing the industry, most of which come down to a lack of policy direction in aviation.

The sector includes training, aeromedical, emergency response and charter services in rural and remote communities.

Interviews conducted with the principals of 21 aviation organizations reveal that outside of regulation, the main concerns are the costs associated with operating premises and airport infrastructure.

Extracellular vesicles captured using sustainable wood cellulose-based nanofiber sheets may identify and improve cancer treatment

Researchers developed a technique using cellulose nanofiber (CNF) sheets to capture extracellular vesicles (EVs). Extracting and analyzing EVs using this technology has the potential to revolutionize early cancer diagnosis and open the door to personalized medicine.
Image Credit: Takao Yasui

A research team in Japan, led by Nagoya University’s Akira Yokoi, has developed an innovative technique using cellulose nanofiber (CNF) sheets derived from wood cellulose to capture extracellular vesicles (EVs) from fluid samples and even organs during surgery. EVs are small structures from cancerous cells that play a crucial role in cell-to-cell communication. Extracting and analyzing EVs using this new technology has the potential to revolutionize early cancer diagnosis and open the door to personalized medicine. The researchers published their findings in Nature Communications

Cancer is notorious for its poor prognosis and in many cases goes undetected until its advanced stages, leaving patients with limited treatment options. Detecting the cancer early using EVs and analyzing them provides vital information on disease status and its progression. This should assist physicians in monitoring and adjusting personalized cancer treatment plans. However, researchers have been limited in previous attempts to use EVs due to the lack of an effective isolation strategy. 

Wednesday, November 8, 2023

Scientists are taking major steps towards completing the world’s first synthetic yeast.

Photo Credit: Karyna Panchenko

A UK-based team of Scientists, led by experts from the University of Nottingham and Imperial College London, have completed construction of a synthetic chromosome as part of a major international project to build the world’s first synthetic yeast genome.

The work, which is published today in Cell Genomics, represents completion of one of the 16 chromosomes of the yeast genome by the UK team, which is part of the biggest project ever in synthetic biology; the international synthetic yeast genome collaboration.

The collaboration, known as 'Sc2.0' has been a 15-year project involving teams from around the world (UK, US, China, Singapore, UK, France and Australia), working together to make synthetic versions of all of yeast's chromosomes. Alongside this paper, another 9 publications are also released today from other teams describing their synthetic chromosomes. The final completion of the genome project - the largest synthetic genome ever - is expected next year.

New antifungal molecule kills fungi without toxicity in human cells, mice

The mechanism for a critical but highly toxic antifungal is revealed in high resolution. Self-assembled Amphotericin B sponges (depicted in light blue) rapidly extract sterols (depicted in orange and white) from cells. This atomic level understanding yielded a novel kidney-sparing antifungal agent. 
Illustration Credit: Jose Vazquez

A new antifungal molecule, devised by tweaking the structure of prominent antifungal drug Amphotericin B, has the potential to harness the drug’s power against fungal infections while doing away with its toxicity, researchers at the University of Illinois Urbana-Champaign and collaborators at the University of Wisconsin-Madison report in the journal Nature.

Amphotericin B, a naturally occurring small molecule produced by bacteria, is a drug used as a last resort to treat fungal infections. While AmB excels at killing fungi, it is reserved as a last line of defense because it also is toxic to the human patient – particularly the kidneys. 

Temperature increase triggers viral infection

Illustration of phage virus injecting its DNA into a cell
Illustration Credit: Alex Evilevitch and Ting Liu

Researchers at Lund University, together with colleagues at the NIST Synchrotron Facility in the USA, have mapped on an atomic level what happens in a virus particle when the temperature is raised.

"When the temperature rises, the virus's genetic material changes its form and density, becoming more fluid-like, which leads to its rapid injection into the cell," says Alex Evilevitch who led the study.

Viruses lack their own metabolism and the ability to replicate independently; they are entirely dependent on a host cell to multiply. Instead, the virus hijacks the internal machinery of the infected cell to produce new virus particles, which are then released and spread to infect other cells.

In most cases, the virus's genetic material, DNA, is enclosed within a protective protein shell called a capsid. A research group at Lund University is working to understand the process by which the virus ejects its genetic material from the capsid and into cells and what causes the virus's DNA to be released.

It all began with a study published in 2014, where the Lund University researchers observed that there seems to be a sudden change in the virus's genetic material when exposed to the infection temperature, around 37 degrees.

‘Alien’ wasps thriving in tropical forests, study finds

Dolichomitus
Photo Credit: Pjt56
(CC BY-SA 4.0 DEED)

Researchers say they have discovered high diversity of Darwin wasps in a tropical rainforest in Brazil, wasps which were previously thought to thrive more in cooler habitats.

The wasps, which survive by living off host insects and spiders until adult-sized, were discovered on a mountain in the Brazilian Atlantic Rainforest. The number of types found were similar to that previously found in the whole of the UK.

The latest findings adds to a growing body of evidence that debunks the widely held belief that the Darwin wasp does not thrive in tropical environments and points to the possibility of many wasp species unknown to researchers in the past.

Researchers say it also provides further evidence of the biodiversity of the Brazilian Atlantic Rainforest and the significance of protecting and restoring the land from the effects of climate change and damage caused by human activities.

Physicists trap electrons in a 3D crystal for the first time

The rare electronic state is thanks to a special cubic arrangement of atoms (pictured) that resembles the Japanese art of “kagome.” 
Image Credit: Courtesy of the researchers / MIT

Electrons move through a conducting material like commuters at the height of Manhattan rush hour. The charged particles may jostle and bump against each other, but for the most part they’re unconcerned with other electrons as they hurtle forward, each with their own energy.

But when a material’s electrons are trapped together, they can settle into the exact same energy state and start to behave as one. This collective, zombie-like state is what’s known in physics as an electronic “flat band,” and scientists predict that when electrons are in this state, they can start to feel the quantum effects of other electrons and act in coordinated, quantum ways. Then, exotic behavior such as superconductivity and unique forms of magnetism may emerge.

Now, physicists at MIT have successfully trapped electrons in a pure crystal. It is the first time that scientists have achieved an electronic flat band in a three-dimensional material. With some chemical manipulation, the researchers also showed they could transform the crystal into a superconductor — a material that conducts electricity with zero resistance.

Scientists engineer potent immune cells for ‘off-the-shelf’ cancer immunotherapy

Illustration Credit: Scientific Frontline

UCLA scientists have developed a new method to engineer more powerful immune cells that can potentially be used for “off-the-shelf” cell therapy to treat challenging cancers.

“Off-the-shelf” cell therapy, also known as allogenic therapy, uses immune cells derived from healthy donors instead of patients. The approach can bring cell therapies, like chimeric antigen receptor (CAR) T cell therapy, to more patients in a timelier manner, which is one of the major barriers in getting these life-saving treatments to patients.

“Time is often of the essence when it comes to treating people with advanced cancers,” said Lili Yang, associate professor of microbiology, immunology and molecular genetics and member of the UCLA Health Jonsson Comprehensive Cancer Center. “Currently, these types of therapies need to be tailored to the individual patient. We have to extract white blood cells from a patient, genetically engineer the cells and then re-infuse them back into the patient. This process can take weeks to months and can cost hundreds of thousands of dollars to treat each patient.”

Experts predict ‘catastrophic ecosystem collapse’ of UK forests within the next 50 years if action not taken

Photo Credit: Greg Larcombe

A team of experts from across Europe has produced a list of 15 overlooked and emerging issues that are likely to have a significant impact on UK forests over the next 50 years.

This is the first ‘horizon scanning’ exercise – a technique to identify relatively unknown threats, opportunities, and new trends – of UK forests. The aim is to help researchers, practitioners, policymakers, and society in general, better prepare for the future and address threats before they become critical.

Dr Eleanor Tew, first author, visiting researcher at Cambridge’s Department of Zoology and Head of Forest Planning at Forestry England said: “The next 50 years will bring huge changes to UK forests: the threats they face, the way that we manage them, and the benefits they deliver to society.”

Forestry England, a part of the Forestry Commission, collaborated with the University of Cambridge on the study, which was published today in the journal, Forestry.

TUM makes first daily current measurements of changes in the earth's rotation

The ring laser in Wettzell has been continuously improved since its commissioning.
Photo Credit: Astrid Eckert / TUM 

Researchers at the Technical University of Munich (TUM) have succeeded in measuring the earth's rotation more exactly than ever before. The ring laser at the Geodetic Observatory Wettzell can now be used to capture data at a quality level unsurpassed anywhere in the world. The measurements will be used in determining the earth's position in space, will benefit climate research and will make climate models more reliable.

Care to take a quick step down to the basement and see how fast the earth has been turning in the last few hours? Now you can at the Geodetic Observatory Wettzell. TUM researchers have improved the ring laser there so that it can provide daily current data, which until now has not been possible at comparable quality levels.

What exactly does the ring laser measure? On its journey through space the earth rotates on its axis at slightly varying speeds. In addition, the axis around which the planet spins is not completely static, it wobbles a bit. This is because our planet is not completely solid, but is made up of various component parts, some solid, some liquid. So, the insides of the earth itself are constantly in motion. These shifts in mass accelerate or brake the planet's rotation, differences which can be detected using measurement systems like the TUM ring laser.

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