Purifying water with the power of the sun

A Notre Dame researcher’s invention could improve access to clean water for some of the world’s most vulnerable people.

 “Today, the big challenges are information technology and energy,” says László Forró, the Aurora and Thomas Marquez Professor of Physics of Complex Quantum Matter in the University of Notre Dame's Department of Physics and Astronomy. “But tomorrow, the big challenge will be water.”

The World Health Organization reports that today nearly 2 billion people regularly consume contaminated water. It estimates that by 2025 half of the world’s population could be facing water scarcity. Many of those affected are in rural areas that lack the infrastructure required to run modern water purifiers, while many others are in areas affected by war, natural disasters or pollution. There is a greater need than ever for innovative ways to extend water access to those living without power, sanitation and transportation networks.

Recently, Forró's lab developed just such a solution. They created a water purifier, described in the Nature partner journal Clean Water, that is powered by a resource nearly all of the world’s most vulnerable people have access to: the sun.

Forensic Study Sheds Light on the Remains of Infants, Children

Photo Credit: Kat Wilcox

A new forensic science study sheds light on how the bones of infants and juveniles decay. The findings will help forensic scientists determine how long a young person’s remains were at a particular location, as well as which bones are best suited for collecting DNA and other tissue samples that can help identify the deceased.

“Crimes against children are truly awful, and all too common,” says Ann Ross, co-author of the study and a professor of biological sciences at North Carolina State University. “It is important to be able to identify their remains and, when possible, understand what happened to them. However, there is not much research on how the bones of infants and children break down over time. Our work here is a significant contribution that will help the medical legal community bring some closure to these young people and, hopefully, a measure of justice.”

For this study, the researchers used the remains of domestic pigs, which are widely used as an analogue for human remains in forensic research. Specifically, the researchers used the remains of 31 pigs, ranging in size from 1.8 kilograms (4 pounds) to 22.7 kilograms (50 pounds). The smaller remains served as surrogates for infant humans, up to one year old. The larger remains served as surrogates for children between the ages of one and nine.

Ural Scientists Design Plastics That Resist Radiation from Technology

Aleksey Korotkov tests the material for electrodynamic properties in an anechoic chamber.
Photo Credit: Rodion Narudinov

The team of scientists from the Institute of Technical Chemistry of the Ural Branch of the Russian Academy of Sciences (branch of the Perm Federal Research Centre of UB RAS) and the Ural Federal University created a composite polymer material. The new composite is made from recycled materials and has unique properties. It reflects electromagnetic waves. It is suitable for wireless systems, including radar and satellite communications systems. Such a composite (actually a plastic) can be used to make housing for devices such as smartphones. It will allow them to reduce their electromagnetic radiation. The description of the new material is published in the journal Diamond and Related Materials.

"It is extremely important that we have been able to create a new composite material from virtually recycled raw materials. The basis of the material is chopped carbon fibers, which we extracted from carbon plastics. In addition, the composition of the composite includes magnetite (it is the magnetic nanoparticles) synthesized in our laboratory. Our work can increase the attractiveness of carbon plastics processing due to the use of secondary extracted carbon fibers in the expensive technologies," says Svetlana Astafieva, the co-author of the development, the Head of the Laboratory of Structural-Chemical Modification of Polymers of the Institute of Technical Chemistry of UB RAS.

Flamingos form cliques with like-minded pals

The partner of one Caribbean flamingo helps it out in an argument with another pair.
Photo Credit Paul Rose

Flamingos form cliques of like-minded individuals within their flocks, new research shows.

Scientists analyzed the personalities and social behavior of Caribbean and Chilean flamingos.

Birds of both species tended to spend time with others whose personality was similar to their own.  

The study, by the University of Exeter and the Wildfowl & Wetlands Trust (WWT), reveals the complex nature of flamingo societies and could help in the management of captive flocks.

“Our previous research has shown that individual flamingos have particular ‘friends’ within the flock,” said Dr Paul Rose, from WWT and Exeter’s Centre for Research in Animal Behavior.

“In this study, we wanted to find out whether individual character traits explain why these friendships form.

“The answer is yes – birds of a feather flock together.

New antioxidants found in beef, chicken, and pork!

Establishment of a highly sensitive detection method for imidazole dipeptide oxidation derivatives
Illustration Credit: Hideshi Ihara, Osaka Metropolitan University

Antioxidants discovered in meat! Osaka Metropolitan University researchers developed a new protocol for selective and highly sensitive detection, discovering five types of 2-oxo-imidazole-containing dipeptides(2-oxo-IDPs) using mass spectrometry. The 2-oxo-IDPs, present in living organisms, exhibit very high antioxidant activity, and were found to be abundant in meat including beef, pork, and chicken.

Osaka, Japan – Imidazole dipeptides (IDPs), which are abundant in meat and fish, are substances produced in the bodies of various animals, including humans, and have been reported to be effective in relieving fatigue and preventing dementia. However, the physiological mechanism by which IDPs exhibit these activities had not been determined previously.

A research team, led by Professor Hideshi Ihara from the Osaka Metropolitan University Graduate School of Science, was the first to discover 2-oxo-imidazole-containing dipeptides (2-oxo-IDPs)—which have one more oxygen atom than normal IDPs—and found that they are the most common variety of IDPs derivatives in the body. The researchers also found that they have remarkably high antioxidant activity.

Less is more

The ability to genetically change bacteria is the key to researching the microbial world.
Image Credit: Braňo

Scientists from Würzburg and Braunschweig have developed a new approach that enables more efficient processing of bacterial genomes.

The ability to genetically change bacteria is the key to researching the microbial world. Genome editing - i.e. processing the genome such as DNA - is essential in order to develop new antibiotics and to use bacteria as miniature factories for the sustainable production of chemicals, materials and therapeutics. Tools based on the CRISPR gene scissors have proven helpful here because they make it possible to change different bacteria quickly, easily and reliably.

The underlying technology requires CRISPR ribonucleic acid (crRNA), which serves as a "lead RNA". It helps to control certain regions of a genome for targeted DNA cleavage. Proteins involved in homologous recombination - a natural process of exchanging genetic material between chromosomes - then insert the designed "repair template" to create a processed sequence of the DNA strand.

Reading out RNA structures in real time

The fluorescent blinking of cyanine dye (Alexa Fluor 647, pink star) bound to RNA changes depending on the structure of the RNA. When the RNA is folded like a hairpin, the fluorescent blinking is fast, and when the RNA switches to a G-quadruplex, the blinking is slow
Illustration Credit: Akira Kitamura

A new microscopic technique allows for the real-time study of RNA G-quadruplexes in living cells, with implications for the fight against amyotrophic lateral sclerosis.

Amyotrophic lateral sclerosis (ALS), commonly known as Lou Gehrig’s disease and Stephen Hawking’s disease, is a neurodegenerative disease that results in the gradual loss of control over the muscles in the body. It is currently incurable and the cause of the disease is unknown in over 90% of all cases — although both genetic and environmental factors are believed to be involved.

The research groups of Dr. Akira Kitamura at the Faculty of Advanced Life Science, Hokkaido University, and Prof. Jerker Widengren at the KTH Royal Institute of Technology, Sweden, have developed a novel technique that is able to detect a characteristic structure of RNA in real time in live cells. The technique, which is based on fluorescence-microscopic spectroscopy, was published in the journal Nucleic Acids Research.

New, safe, and biodegradable compound blocks radiation

Hesham Zakali: The material developed by an international group of scientists could become an alternative to toxic lead, for example.
Photo Credit: Anastasia Kurshpel

Polylactic acid combined with tungsten trioxide effectively blocks gamma radiation, an international group of scientists including specialists from Russia (Ural Federal University), Saudi Arabia and Egypt has found. In the future, it will be possible to create safe and biodegradable screens for protection against low-energy radiation on the basis of the new material, the researchers believe. Such screens are used in medicine, agriculture and the food industry. A description of the material has been published in the journal Radiation Physics and Chemistry.

"Polylactic acid is a non-toxic polymer of natural origin. It is inexpensive and, importantly, can be broken down by microbes when placed in an industrial plant at high temperatures. Since lactic acid is regularly produced as a byproduct of metabolism in both plants and animals, polylactic acid and its degradation products are non-toxic and safe for the environment," explains Hesham Zakali, co-author of the development and Researcher at the Department of Experimental Physics at UrFU.

Cyborg Cells Could Be Tools for Health and Environment

UC Davis biomedical engineers have created semi-living “cyborg cells” that have many of the capabilities of living cells but are unable to divide and grow. The cells could have applications in medicine and environmental cleanup.
Illustration Credit: Cheemeng Tan, UC Davis.

Biomedical engineers at the University of California, Davis, have created semi-living “cyborg cells.” Retaining the capabilities of living cells, but unable to replicate, the cyborg cells could have a wide range of applications, from producing therapeutic drugs to cleaning up pollution. The work was published in Advanced Science.

Synthetic biology aims to engineer cells that can carry out novel functions. There are essentially two approaches in use, said Cheemeng Tan, associate professor of biomedical engineering at UC Davis and senior author on the paper. One is to take a living bacterial cell and remodel its DNA with new genes that give it new functions. The other is to create an artificial cell from scratch, with a synthetic membrane and biomolecules.

The first approach, an engineered living cell, has great flexibility but is also able to reproduce itself, which may not be desirable. A completely artificial cell cannot reproduce but is less complex and only capable of a limited range of tasks.

Tens of thousands of possible catalysts on the diameter of a hair

The results of the sputtering process can be seen under the light microscope.
Image Credit: © Lars Banko

New methods make it possible to produce countless new materials in one step and to examine them quickly.

When looking for catalysts for the energy transition, materials made from at least five elements are particularly promising. Only there are theoretically millions of them - how do you find the most powerful? A Bochum research team led by Prof. Dr. Alfred Ludwig, head of the Materials Discovery and Interfaces chair, MDI, managed to accommodate all possible combinations of five elements on one carrier in a single step. In addition, the researchers developed a method to analyze the electrocatalytic potential of each of the combinations in this micromaterial library in high throughput. In this way, they want to speed up the search for potential catalysts many times over. The team at the Ruhr University Bochum reports in the journal Advanced Materials.

New approach successfully traces genomic variants back to genetic disorders

Doctors researching DNA and genetics.
Illustration Credit: Julia Fekecs, NHGRI

National Institutes of Health researchers have published an assessment of 13 studies that took a genotype-first approach to patient care. This approach contrasts with the typical phenotype-first approach to clinical research, which starts with clinical findings. A genotype-first approach to patient care involves selecting patients with specific genomic variants and then studying their traits and symptoms; this finding uncovered new relationships between genes and clinical conditions, broadened the traits and symptoms associated with known disorders, and offered insights into newly described disorders. The study was published in the American Journal of Human Genetics.

“We demonstrated that genotype-first research can work, especially for identifying people with rare disorders who otherwise might not have been brought to clinical attention,” says Caralynn Wilczewski, Ph.D., a genetic counselor at the National Human Genome Research Institute’s (NHGRI) Reverse Phenotyping Core and first author of the paper.

Typically, to treat genetic conditions, researchers first identify patients who are experiencing symptoms, then they look for variants in the patients’ genomes that might explain those findings. However, this can lead to bias because the researchers are studying clinical findings based on their understanding of the disorder. The phenotype-first approach limits researchers from understanding the full spectrum of symptoms of the disorders and the associated genomic variants.

Developing antibiotics that target multiple-drug-resistant bacteria

The sphaerimicin analogs (SPMs) inhibit the activity of MraY, and hence the replication of bacteria, with different degrees of effectiveness. The potency of the analog increases as the IC50 decrease Illustration Credit: Takeshi Nakaya, et al. Nature Communications. December 20, 2022

Researchers have designed and synthesized analogs of a new antibiotic that is effective against multidrug-resistant bacteria, opening a new front in the fight against these infections.

Antibiotics are vital drugs in the treatment of a number of bacterial diseases. However, due to continuing overuse and misuse, the number of bacteria strains that are resistant to multiple antibiotics is increasing, affecting millions of people worldwide. The development of new antibacterial compounds that target multiple drug resistant bacteria is also an active field of research so that this growing issue can be controlled.

A team led by Professor Satoshi Ichikawa at Hokkaido University has been working on the development of new antibacterial. Their most recent research, published in the journal Nature Communications, details the development of a highly effective antibacterial compound that is effective against the most common multidrug-resistant bacteria.

The clever glue keeping the cell’s moving parts connected

This liquid droplet is actually made from protein molecules. It acts as a glue that keeps the microtubule attached, via moving motor proteins, to an actin cable – a process essential for cell division to proceed.
 Illustration Credit: Ella Maru Studios, Courtesy of Paul Scherrer Institute

Researchers from Paul Scherrer Institute PSI and ETH Zurich have discovered how proteins in the cell can form tiny liquid droplets that act as a smart molecular glue. Clinging to the ends of filaments called microtubules, the glue they discovered ensures the nucleus is correctly positioned for cell division. The findings, published in Nature Cell Biology, explain the long-standing mystery of how moving protein structures of the cell’s machinery are coupled together.

Couplings are critical to machines with moving parts. Rigid or flexible, whether the connection between the shafts in a motor or the joints in our body, the material properties ensure that mechanical forces are transduced as desired. Nowhere is this better optimized than in the cell, where the interactions between moving subcellular structures underpin many biological processes. Yet how nature makes this coupling has long baffled scientists.

Now researchers, investigating a coupling crucial for yeast cell division, have revealed that to do this, proteins collaborate such that they condense into a liquid droplet. The study was a collaboration between the teams of Michel Steinmetz at Paul Scherrer Institute PSI and Yves Barral at ETH Zurich, with the help of the groups of Eric Dufresne and Jörg Stelling, both at ETH Zurich.

Scientists use machine learning to gain unprecedented view of small molecules

Metabolites are extremely small – the diameter of a human hair is 100,000 nanometers, while that of a glucose molecule is approximately one nanometer.
Illustration Credit: Matti Ahlgren/Aalto University.

A new tool to identify small molecules offers benefits for diagnostics, drug discovery and fundamental research.

A new machine learning model will help scientists identify small molecules, with applications in medicine, drug discovery and environmental chemistry. Developed by researchers at Aalto University and the University of Luxembourg, the model was trained with data from dozens of laboratories to become one of the most accurate tools for identifying small molecules.

Thousands of different small molecules, known as metabolites, transport energy and transmit cellular information throughout the human body. Because they are so small, metabolites are difficult to distinguish from each other in a blood sample analysis – but identifying these molecules is important to understand how exercise, nutrition, alcohol use and metabolic disorders affect wellbeing.

The Donnan Potential, Revealed at Last

Staff scientist Ethan Crumlin at Berkeley Lab's Advanced Light Source.
Photo Credit: Marilyn Sargent/Berkeley Lab

The Donnan electric potential arises from an imbalance of charges at the interface of a charged membrane and a liquid, and for more than a century it has stubbornly eluded direct measurement. Many researchers have even written off such a measurement as impossible.

But that era, at last, has ended. With a tool that’s conventionally used to probe the chemical composition of materials, scientists at the Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) recently led the first direct measurement of the Donnan potential.

“We were naïve enough to believe we could do the impossible.”

Ethan Crumlin, Berkeley Lab staff scientist, Advanced Light Source (ALS)

Crumlin and his collaborators recently reported the measurement in Nature Communications.

Such a measurement could yield new insights in many areas that focus on membranes. The Donnan potential plays a critical role in transporting ions through a cellular membrane, for example, which ties it to biological functions ranging from muscle contractions to neural signaling. Ion exchange membranes are also important in energy storage strategies and water purification technologies.

Scientists use materials to make stem cells behave like human embryos

Stem cells confined in a circular shape on a soft gel display characteristic of embryonic development.
Photo Credit: University of New South Wales

A serendipitous discovery in the lab has the potential to revolutionize embryo models and targeted drug therapies.

Materials scientists at UNSW Sydney have shown that human pluripotent stem cells in a lab can initiate a process resembling the gastrulation phase – where cells begin differentiating into new cell types – much earlier than occurs in mother nature.

For an embryo developing in the womb, gastrulation occurs at day 14. But in a lab at UNSW’s Kensington campus, Scientia Associate Professor Kris Kilian oversaw an experiment where a gastrulation-like event was triggered within two days of culturing human stem cells in a unique biomaterial that, as it turned out, set the conditions to mimic this stage of embryo development.

“Gastrulation is the key step that leads to the human body plan,” says A/Prof. Kilian.

“It is the start of the process where a simple sheet of cells transforms to make up all the tissues of the body – nerves, cardiovascular and blood tissue and structural tissue like muscle and bone. But we haven’t really been able to study the process in humans because you can’t study this in the lab without taking developing embryonic tissue.

Researchers kick goals with soccer findings

Photo Credit: Joshua Hoehne

University of Queensland scientists have developed a model that gives soccer players their best chance of kicking a penalty goal.

After analyzing strategies used by penalty shot kickers and goalkeepers, researchers developed a model that coaches can use to identify the best shooting strategy against a particular goalkeeper.

Professor Robbie Wilson, head of the UQ Football Research Group at UQ’s School of Biological Sciences, said the outcome of a penalty shot was determined by a complex interaction between the shooter and the goalkeeper.

“Usually, a player’s performance is constrained by biomechanical trade-offs but each player has a range of strategies to overcome these,” Professor Wilson said.

“For example, if a shooter kicks at a high speed, accuracy is decreased, and if a goalkeeper moves early, the probability they’ll move in the correct direction is reduced.”

He said every player, including international stars like Cristiano Ronaldo and Lionel Messi, had a range of kicking speeds and areas of the goal in which they were naturally better or worse.

Neural Network Learned to Create a Molecular Dynamics Model of Liquid Gallium

The melt viscosity determines the choice of casting mode, ingot formation conditions and other parameters.
Photo Credit: Ilya Safarov

Scientists at the Institute of Metallurgy, Ural Branch of the Russian Academy of Sciences, and Ural Federal University have developed a method for theoretically high-precision determination of the viscosity of liquid metals using a trained artificial neural network. The method was successfully tested in the process of building the deep learning potential of the neural network on the example of liquid gallium. Scientists were able to significantly increase the spatiotemporal scale of the simulation. The results of molecular dynamics modeling of liquid gallium are particularly accurate. Previous calculations were notoriously inaccurate, especially in the low temperature range. An article describing the research was published in the journal Computational Materials Science.

"First, liquids are in principle difficult to be described theoretically. The reason, in our opinion, lies in the absence of a simple initial approximation for this class of systems (for example, the initial approximation for gases is the ideal gas model). Secondly, the atomistic calculation of viscosity requires processing of a large volume of statistical data and, at the same time, a large accuracy of description of the potential energy surface and forces acting on atoms. Direct calculations cannot achieve such an effect. Thirdly, gallium in the liquid state is difficult to describe theoretically, because, due to certain features, its structure differs from that of most other metals," explains Vladimir Filippov, Senior Researcher at the Department of Rare Metals and Nanomaterials at UrFU, research participant and co-author of the article.

FAU study finds low salinity can work to culture Florida pompano fish

Florida Pompano larvae (juvenile fish) pictured under a microscope.
Photo Credit: Victoria Uribe, FAU Harbor Branch

The Florida pompano, Trachinotus carolinus, a fish species that can live in waters of a wide range of salinity, is a prime candidate for aquaculture commercial fish production in the United States. Identified by its compressed silvery body with yellow dorsal and ventral surfaces, this species is found in warm water habitats along the eastern Atlantic Ocean. Florida pompano also is a popular target for recreational anglers along the U.S. Atlantic Coast from Massachusetts to Florida.

There are less than 10 aquaculture farms across the U.S. that have been successful in commercially raising and distributing Florida pompano. Many farms import their broodstock from countries such as Mexico, the Dominican Republic and Brazil. When attempting to rear Florida pompano from hatch to market, farms face a variety of challenges including access to seawater. On inland farms, seawater must be mixed on-site using artificial sea salt products, which can contribute to high production costs and lower profit returns.

While several studies have investigated using juvenile Florida pompano in low salinity, no low salinity experiments have been conducted on Florida pompano larvae (early stages of a fish). To address the knowledge gaps of the impact of low salinity on Florida pompano larval health, researchers from Florida Atlantic University’s Harbor Branch Oceanographic Institute, in collaboration with two local fish farms, Live Advantage Baits and Proaquatix, conducted a novel experiment that serves as a model study for future on-farm collaborations and helps build a bridge between scientists and farmers in aquaculture.

Business Professors Solve Century-old Math Problem

Illustration Credit: Yesenia Carrero /UConn

These professors made a ridiculously hard logistics problem easy to solve. In the process, they smashed a basic tenet of computer theory. And now they’re offering a $10,000 prize to anyone who can show they’re wrong.

“You have many choices to make. What’s your best choice, given limited resources, to maximize your profit?” asks Moustapha Diaby, an associate professor of operations management in UConn’s School of Business.

It may be the basic question of life in a capitalist society. It’s also the basic question behind operations research, a field of study that blossomed in the 1940s. One of operations research’s basic insights is that linear programming, which is part of a broader technique called “constrained optimization,” can answer these common business questions, says Diaby.

Imagine, for example, that you run an oil refinery. You need to decide how much gasoline (g) and diesel fuel (d) to make from each barrel of oil in order to maximize your profit. If you make a $3 profit per gallon of gas, and $5 per gallon of diesel, the objective of the optimization problem would be to maximize 3g + 5d.